Novel strategies in antibacterial drug developmentref
:
antivirulence-directed therapy
target virulent bacteria
requires discovery of a lethal target present only in virulent bacteria
vaccination directed against virulence determinants has also been
proposed
this approach would prevent acquisition of antibiotic resistance genes
by non-pathogenic bacteria
genomics : new targets for inhibiting bacterial growth and variability
: block vital metabolic pathway, efflux pump inhibitors, quorum-sensing
signalling systems, hoped that mutations in the targeted gene that may
occur through drug pressure will not be compatible with viability.
Identify
target gene => clone gene, express, purify and crystallize =>
identify
active site and screen molecule against site => test in whole
bacteria.
200-400 bacterial genes are essential genes and are a priori candidates
for
killing sites by inhibitors. Comparative bacterial genomics allows
further prioritization of ORFs that are conserved in pathogens but
absent
in higher eukaryotes, and for which a function can often be predicted
by
bioinformatics. There are several cases in which additional knowledge
is
likely to increase markedly the probability of finding new
macromolecular
targets. An under-explored target is the transglycosylase step of
peptidoglycan
assembly in the cell wall, in which the chemo-enzymatic synthesis of
the
complex lipoglycopeptide substrate, lipid II, now enables modern
configurations
of high-throughput assays. In Gram-positive bacteria, it has been known
for some time that cell-surface proteins can covalently attach to
peptidoglycan.
Bacterial genomic analyses have identified multiple sortases in
different
pathogens. Deciphering the selectivity of sortases for groups of
proteins
that end up at the cell surface might be a prelude to the screening or
design of inhibitors. Sortases should be readily accessible to ligands,
and therefore good drug targets, but it remains to be proven how
responsive
they will be for bacteriostatic or bacteriocidal action. A final
example
is the non-classical pathway of isoprenoid synthesis. In contrast to
the
classical mevalonate pathway found in eukaryotes, many bacteria,
including
clinically important pathogens, have recently been found to contain the
genes that encode a separate pathway that has deoxyxylulose-5-phosphate
as an intermediate rather than mevalonate. The 7 enzymes of the
deoxyxylulose-5-phosphate
pathway are not present in humans; these enzymes are essential for
lipid
I and II biosynthesis as key intermediates in peptidoglycan assembly.
tageting non-multiplying bacteria (antibiotic kills the multiplying
bacteria)
: combination strategies. When antibiotic dose decreases below a
threshold,
metabolism in non-multiplying bacteria starts and some of them begin to
multiply, becoming susceptible to the next dose of antibiotic
overcoming resistance : strategies to combat efflux pumps-mediated drug
resistance
apramycin, which mimics a short section of RNA, interrupts
the plasmid's
replication by sticking to RNA strands that carry its genetic
information.
This 'blocks' the strands, at which point the host bacterium
categorizes
the plasmid as a foreign body and ejects it. Apramycin is not likely to
be used in clinical trials, because it is quite toxic. But now that the
chemists have proved how it works, they are looking for other molecules
that could do the same job without causing problems for the patient.
Lancet or phenol coefficient : a measure of the bactericidal
activity
of a chemical compound in relation to phenol.
The test is standardized (Rideal-Walker method, U. S. Department of
Agriculture
method). The coefficient is calculated by dividing the concentration of
the test compound at which it kills the test organism in 10 minutes,
but
not in 5 minutes, by the concentration of phenol that kills the
organism
under the same conditions. It can be determined in the absence of
organic
matter, or in the presence of a standard amount of added organic
matter.
Woods-Fildes theory : the theory that the antibacterial
activity
of at least some chemotherapeutic drugs (especially the sulfonamides)
is
a consequence of a competitive inhibition of essential metabolic
reactions
of the microorganism.
isoniazid / isoniazide (INH) /
isonicotinic
acid hydrazide(INAH®, Nydrazid®,
Rifamate®,
...)
is a pro-drug, which, after activation by the mycobacterial katG-encoded
catalase
peroxidase, reacts nonenzymatically with NAD+ and NADP+
to generate several isonicotinoyl adducts of these pyridine nucleotides
:
the acyclic 4S isomer of isoniazid-NAD, targets the inhA-encoded
enoyl-ACP
reductase, an enzyme essential for mycolic acid biosynthesis in Mycobacterium
tuberculosis. It inhibits pyridoxal phosphorylation to vitamin B6
(Mycobacteria cells contain low levels of such a kinase) : so
pyridoxine-dependent
reactions are inhibited (e.g. enoyl-ACP reductase of fatty acid
synthase
(FAS) II, which converts
D2-unsaturated
to saturated fatty acids on the pathway to mycolic acid biosynthesis).
It should be co-administered with vitamin
B6 / pyridoxine
to minimize adverse side effects from pyridoxal kinase inhibition.
the acyclic 4R isomer of isoniazid-NADP inhibits the M.
tuberculosisdihydrofolate
reductase (DHFR), an enzyme essential for nucleic acid synthesis.
This
biologically relevant form of the isoniazid adduct is a subnanomolar
bisubstrate
inhibitor of M. tuberculosis DHFR. Expression of M.
tuberculosis
DHFR in Mycobacterium smegmatis mc2155 protects cells against
growth
inhibition by isoniazid by sequestering the drugref.
ethionamide (Trecator-SC®)
inhibits
the acetylation of isoniazid in vitro.
prothionamide
pyrazinamide (PZA)
(pyrazine analog
of nicotinamide) inhibits mycobacterial fatty acid synthase (FAS) I,
involved
in mycolic acid biosynthesis.
D-ethambutol
hydrochloride
(Myambutol®).
It
blocks arabinosyl transferases involved in synthesis of lipoarabinomannan
(LAM)
and mycolic acids. It is the only chemotherapeutical effective on Mycobacterium
marinum.
Side
effects : visual disturbances
daptomycin (Cidecin®,
Cubicin®)
:
rapidly bactericidal, i.v. only, may cause myalgia, efficacy for
bacteremia/endocarditis
not demonstrated
riminophenazines :
B663 / clofazimine / clofazamine
(Lamprene®)
inhibits Na+/K+ ATPase and acts as an
immunosuppressor
B669
b-lactams have been introduced
in 1940
:
penicillins :
tetrahydrothiazole-containing
(penem group) compounds that irreversibly
inhibit the transpeptidase activity of penicillin-binding protein (PBP)
3. 1 international unit of penicillin : the specific penicillin
activity contained in 0.6 mg of the
international
standard sodium salt of penicillin II or G.
natural
penicillins(Gram
+ve Bacteria and Neisseria
gonorrhoeae).
Resistance to penicillin today occurs in as many as 80% of all strains
of Staphylococcus aureus : surprisingly, Streptococcus
pyogenes
has never fully developed resistance to penicillin !
semisynthetic penicillins (Gram
-ve rods).
A mold produces the main part of the molecule (6-aminopenicillanic
acid)
which can be modified chemically by the addition of side shains.
Resistant
to b-lactamase.
dihydropenicillin F
a-aminopenicillins
/
2nd generation
amoxicillin (Amoxil®,
Hiconcil®; Pulsys® is a once-daily
formulation;
Flumox® in combination with flucloxacillin)
ampicillin (Omnipen®,
Polycillin®,
Pentrexyl®, Servicillin®, ...) is
effective
orally (prodrugs : bacampicillin (Penglobe®, Spectrobid®),
etacillin,
pivampicillin
(Pondocillin®),
talampicillin
and metampicillin)
Side effects : type
I,
type
II,
type
III
and type
IV
hypersensitivities. Before the initiation of cephalosporin therapy,
skin
testing should be performed for patients with a suspected history of
IgE-mediated
reactions to penicillinsref.
The
rate of cross-reactivity of > 10% between penicillins and cephalosporins
has not been well established. 3 retrospective clinical studies
reported
rates of reaction to carbapenems of 9 to
11%
among inpatients with a reported penicillin allergyref1,
ref2,
ref3.
An
earlier study reported that of 20 subjects with a positive penicillin
skin test, 10 reacted to an imipenem reagentref.
oxacephems (oxacephem group)
: effective
against Gram +ve and
Gram -ve Bacteria, penicillinase-resistant.
latamoxef
moxalactam (Moxam®)
cephalosporins (Gram
+ve and Gram
-ve Bacteria) (from 7-aminocephalosporanic
acid).
Cephem
group. They tend to be resistant to
b-lactamases/penicillinases
from S. aureus. They bind PBP3.
ceftobiprole
medocaril / BAL 5788
/ RO 65-5788 / JNJ 30982081 is the water-soluble prodrug of the
pyrrolidinone
cephalosporin, ceftobiprole / BAL 9141 / RO 63-9141, which has
activity
against P.aeruginosaref
carbapenems (Gram
+ve cocci and
Gram -ve rods, P.aeruginosa, anaerobes, Enterococci)
(the
N atom in the penem group of penicillin is substitued by a C atom
=> carbopenem group). They arise from
modifications
of the chemically unstable thienamycin.
Parenteral administration.
group 1 : no activity against nonfermenting bacteria
tebipenem / ME121 (Japan)
panipenem + betamipron
(PAPM/BP) (Carbenin® + betamipron) : to inhibit
panipenem
uptake into the renal tubule and prevent nephrotoxicity
group 2 : activity against nonfermentating bacteria
imipenem
(IPM) / MK
0787 / N-formimidoiyl thienamycin + cilastatin
(IPM/CS) (an inhibitor of renal dihydropeptidase
I
(DHP-I)-mediated hydrolysis in proximal renal tubule) (Imipem®,
Primaxin®,
Tienem®). As it is a zwitterion
it
can penetrates the outer membrane in Gram -ve Bacteria.
The
trans-hydroxyethil side chain differs from the cis-aminoacyl
side
chain in penicillins and so this molecule is not a substrate for
b-lactamase.
It binds PBP a/Ib.
biapenem (BIPM) (Japan) is
more stable than
imipenem, meropenem and panipenem to hydrolysis by human renal DHP-I,
and
therefore does not require the coadministration of a DHP-I inhibitor.
group 3 : tomopenem
ertapenem (Invanz®)
is a once-daily parenteral group 1 carbapenem antibiotic used in the
treatment
of complicated intraabdominal infectionref1,
ref2,
ref3.
Several
characteristics of ertapenem make its use attractive as a potential
preoperative antimicrobial agent in elective colorectal surgery, since
it is characterized by rapid intravenous administration, appropriate
coverage
against potential pathogens, a long half-life (so it does not require a
second administration during most surgeries), and a safety profile
similar
to that of other commonly used antibioticsref1,
ref2,
ref3,
ref4
faropenem daloxate (Farom®),
a
new oral penem
RO4908463 / CS-023
olivanic
acids
/ olivanates
MM4550
MM13902
MM17880
MM22380
MM22381
MM22382
MM22383
In recent years, the number of class D beta-lactamases with
carbapenem-hydrolysing
properties has increased substantially. Based on amino acid sequence
identities,
these class D or OXA-type carbapenemases are divided into eight
distantly
related groups, and they are only remotely related to other class D
beta-lactamases.
A putative ancestor to one of the plasmid-encoded OXA-type
carbapenemases
has been found. OXA-type carbapenemases are not integrated into
integrons
as gene cassettes like many class D oxacillinases, but most of the
OXA-type
carbapenemases are instead encoded by chromosomal genes. Some of these
OXA-type carbapenemases are widely dispersed in Pseudomonas aeruginosa
and especially in Acinetobacter baumannii. Although most of the
OXA-type
carbapenemases show only weak carbapenemase activity, carbapenem
resistance
may result from a combined action an OXA-type carbapenemase and a
secondary
resistance mechanism such as porin deficiencies or overexpressed efflux
pumps. This article reviews the phylogeny and the genetic environments
of the encoding genes and kinetic properties of the OXA-type
carbapenemasesref
b-lactamase / penicillinase
competitive irreversible
inhibitors (they are effective only if coupled to a penicillin
whose
pharmacokinetics is identical) :
glycopeptides (heptapeptide-attached sugars) have been
introduced
in 1958 (Gram +ve Bacteria)
vancomycin group
vancomycin
hydrochloride (Lyphocin®,
Vancocin®,
Vancoled®)
inhibits
both transglycosylation and transpeptidation reactions during
peptidoglycan assembly: it makes 5 hydrogen bonds to the -D-Ala-D-Ala
dipeptide terminus of each uncrosslinked peptidoglycan side chain,
inhibiting
both the transglycosilase and transpeptidase activity of PBPs. Nowadays
vancomycin-resistant
Enterococci
(VRE)
and vancomycin-resistant
Staphylococcus
aureus (VRSA)
(MBC > 32 mg/mL) appeared thanks to a
plasmid-coded
enzyme that creates -D-Ala-D-lactate
termini,
resulting in the loss of 1 hydrogen bond that significantly reduces
the binding constant ! The VanA strains are resistant to both
vancomycin
and teicoplanin, while the VanB
strains
are resistant to vancomycin only.
Side effects : nephrotoxicity,
histamine-mediate
"red-man
syndrome"
(anaphylactoid reaction). Cross-resistance to glycopeptides can arise
from
use of avoparcin as growth promoter in animal feeding.
oritavancin / LY333328
teicoplanin group : N-methylLeu in 1 and Lys in
3 are replaced
by substituted phenylGlys
teicoplanin
(Targocid®, Targosid®) (a
lipoglycopeptide
less toxic than vancomycin)
telavancin
ristocetin
(it also binds to vWF (which in fact is a.k.a. ristocetin cofactor)
causing
human platelets aggregation)
dalbavancin (Pfizer) : a new
milestone
of outpatient antimicrobial therapy (OPAT) ? One-shot schedule (1-week
half-life; 60% accumulates in bone)
eremomycin
BRL 47761
ramoplanin (a
glycolipodepsipeptide consisting
of 17 amino acids cyclized to a macrolactone) inhibits transpeptidase
activity
of PBPs
bacitracin
zinc (AK-Tracin®,
Baci-IM®, Baciferm®; Polysporin®
in combination with polymixin B; Bimixin®
in combination with neomycin; Neosporin®
in combination with both neomycin and polymixin
B) (Gram +ve
Bacteria) needs
a divalent cation (Mg2+, Zn2+, Co2+, Ni2+
or Cu2+) to bind the undecaprenol-P-P and preventing it from
being dephosphorylated by a membrane pyrophosphatase. It has a high
kidney
toxicity which precludes its systemic use. It is present in many
topical
antibiotic preparations, and since it is not absorbed by the gut, it is
given to "sterilize" the bowel prior to surgery.
D-cycloserine
(Seromycin®)
(Gram -ve and Gram
+ve
Bacteria)
(from Streptomyces orchidaceous) enters bacterial cells by
means
of an active transport system for Gly and can reach a relatively high
intracellular
concentration inhibiting Ala racemase and D-Ala-D-Ala
synthetase. Side effects : as it is
fairly
toxic (NMDA-R
partial agonist) it has limited use as a secondary drug for TBC.
spirocyclohexene
griseofulvin
inhibits microtubule formation in mitotic spindle. It may act as a
photosensitizer.
antibacterial interfering with
cell membrane integrity : these antibiotics disorganize the
structure
or inhibit the function of bacterial membranes. However, due to the
similarities
in phospholipids in eubacterial and eukaryotic membranes, this action
is
rarely specific enough to permit these compounds to be used
systemically.
cyclic polypeptides
polymyxin.
Effective mainly against Gram -ve Bacteria
: usage is usually limited to topical usage and is occasionally given
for
UTIs caused by Pseudomonas strains that are gentamicin-,
carbenicillin-
and tobramycin-resistant. The balance between effectiveness and damage
to the kidney and other organs is dangerously close, and the drug
should
only be given under close supervision in the hospital.
polymixin B sulfate (a
mixture of polymixin
B1 and B2) (Aerospin®; Polysporin®
in combination with bacitracin; Neosporin®
in combination with bacitracin and neomycin;
Neosporin® in combination with gramicidin and neomycin;
Polytrim® in combination with trimethoprim)
binds
to the lipid-A portion (the hyppo) of LPSref
polymixin E / colistin
(Acetylcolistin®,
Colisticina®, Colistin-600®, Colimicin®,
Coly-Mycin-S®, Multimycine®) (bactericidal)
from Aerobacillus colistinus
polyene : inhibits sterols present in cell
wall-less Bacteria, but they are mainly used as antifungal
agents.
platensimycin, a previously
unknown
class of antibiotics produced by Streptomyces platensis.
Platensimycin
demonstrates strong, broad-spectrum Gram-positive antibacterial
activity
by selectively inhibiting cellular lipid biosynthesis. This
anti-bacterial
effect is exerted through the selective targeting of b-ketoacyl-(acyl-carrier-protein
(ACP)) synthase I/II (FabF/B) in the synthetic pathway of fatty
acids.
Direct binding assays show that platensimycin interacts specifically
with
the acyl-enzyme intermediate of the target protein, and X-ray
crystallographic
studies reveal that a specific conformational change that occurs on
acylation
must take place before the inhibitor can bind. Treatment with
platensimycin
eradicates Staphylococcus aureus infection in mice. Because of
its
unique mode of action, platensimycin shows no cross-resistance to other
key antibiotic-resistant strains tested, including MRSA, VISA and VRE.
Platensimycin is the most potent inhibitor reported for the FabF/B
condensing
enzymes, and is the only inhibitor of these targets that shows
broad-spectrum
activity, in vivo efficacy and no observed toxicityref.
macrolides have been introduced
in 1952
(against most Bacteria ; bactericidal
for a few Gram +ve Bacteria) :
macrocylic
(12÷22 carbon atoms) lactones linked through glycoside bonds
with
amino sugars. Binding to the rRNA 23S (P8 protein ?) in the 50S
ribosomal
subunit inhibits elongation of the protein by peptidyl transferase or
prevents
translocation of the ribosome or both.
erythromycin base (E-Mycin®,
Ilotycin®,
...),
estolate (Ilosone®),
gluceptate
(Ilotycin Gluceptate®), ethylsuccinate (E.E.S.®,
...)
+ sulfisoxazole or lactobionate (Erythrocyn Lactobionate-I.V.®)
;
Benzamycin®, Persa-Gel®, ... in
combination
with benzoyl
peroxide.
From Streptomyceserythreus : not
effective
against Enterobacteriaceae. Bactericidal
in
vitro at high concentrations.
spiramycin (Rovamycine®,
Ulcar®) for treatment of toxoplasmosis and
cryptosporidiosis
Cross-resistance to macrolides can arise from use of tylosin
and
virginiamycin
as additives in animal feeding.
third-generation macrolides / 3-ketolides (a 3-keto
group replacesL-cladinose
group of macrolides)
telithromycin (Ketek®)
is
99% effective in vitro against Streptococcus
pneumoniae.
i.v. only, may cause nausea and vomiting, and acute
hepatitisref.
It
inhibits secretion of IL-1b and TNF-aref
fidaxomicin
(previously referred to as OPT-80), a macrocyclic
antibiotic, is more
active in vitro than vancomycin, by a factor of approximately 8,
against clinical isolates of C. difficile, including
NAP1/BI/027 strains
clindamycin (Cleocin®,
Dalacin
C®) pediatric (Cleocin Pediatric®),
topical (Cleocin T®) or topical phosphate (Cleocin
Phosphate®,
Actiza®) is 7-chloro-7-deoxylincomycin, effective
against
Gram
+ve Bacteria and Gram -ve Neisseria,
Hemophilus
influenzae,Bacteroides
spp.).
Velac® in combination with tretinoin.
Cross-resistance to lincosamides can arise from use of tylosin
and
virginiamycin
as additives in animal feeding.
streptogramins
(introduced in 1962) bind 50S impairing both early peptide chain
elongation
and late peptide chain extrusion => bacteriostatic.
They
are a mix of :
A (macrolide)
dalfopristin
B (cyclic peptide)
quinupristin
pristinamycin / RP 59500 =
quinupristin
+ dalfopristin (Q/D) (Synercid®) : they are
semisynthetic
derivatives of pristinamycins.
i.v. only, not active against E.faecalis, efficacy for
bacteremia/endocarditis
not demonstrated
Cross-resistance to streptogramins can arise from use of tylosin
and virginiamycin as additives in animal feeding.
fusidic acid (against
Gram
+ve Bacteria;
bactericidal
in vitro at high concentrations) (from Fusidium coccineum)
inhibits
EF-G
viomycin (Viocin®)
: a basic
polypeptide antibiotic administered intramuscularly (along with other
drugs)
in the treatment of Mycobacterium
tuberculosis.
May cause ototoxicity
phenicols / phenyl propanoids
have been
introduced in 1949: effective against Gram +ve and Gram -ve cocchi and
Salmonella
typhi
chloramphenicol
(currently it is produced entirely by chemical synthesis) (AK-Chlor®,
Chloromycetin®, Chloroptic®, Ocu-Chlor®;
Colbiocin® in combination with rolitetracycline
and sodium colistimetate) inhibits the bacterial enzyme peptidyl
transferase
in the 50S subunit
Side effects : since mitochondria
probably
originated from prokaryotic cells and have 70S ribosomes, they are
subject
to inhibition. The eukaryotic cells most likely to be inhibited by
chloramphenicol
are those undergoing rapid multiplication, thereby rapidly multiplying
mitochondria.
such cells include the blood forming cells of the bone marrow, the
inhibition
of which could present as acquired
aplastic anemia
in 1:50,000. Bone marrow toxicity was recognized to be associated with
chloramphenicol in 2 ways:
a dose-dependent reversible marrow depression that disappears when the
drug is stopped
an idiosyncratic reaction that causes irreversible marrow failure
(albeit
quite rarely) that is not dose-dependent and may occur at quite low
drug
levels. It should be noted that cases of the idiosyncratic reaction
have
been described following the use of chloramphenicol eye drops
in newborns it may cause gray
syndrome
(a potentially fatal condition seen in neonates, particularly premature
infants, characterized by an ashen gray cyanosis, listlessness,
weakness,
and gray syndrome, a potentially fatal condition seen in
neonates,
particularly premature infants, due to a reaction to chloramphenicol,
characterized
by an ashen gray cyanosis, listlessness, weakness, and systemic
arterial
hypotension)
due to inadequate glucuronidation with drug accumulation.
Chloramphenicol was a commonly used antibacterial agent in the 1950s
and,
like other antimicrobials in use today, was commonly used in situations
where no specific antibiotic is required (such as in a viral
respiratory
infection). Now it is seldom used in human medicine except in
life-threatening
situations (e.g. typhoid fever). R plasmid-encoded resistance gene =
chloramphenicol
acetyltransferase(CAT). The only antimicrobial whose
enteric
absorption (palmitate) is better than parenteral absorption (succinate)
In Jan 2002, chloramphenicol was detected in animal feed in Europe.
This contamination was traced to fish/seafood products coming from the
Far East. A commentary from the Chinese Ministry of Agriculture
on
the "Draft Report for the Residue Control in Live Animals and Animal
Products
by EC Inspection Mission to China"ref
mentions that chloramphenicol was discontinued from the Chinese
Veterinary
Pharmarcopoeia in 2000. An investigation into the contamination of
shrimp
revealed that 'the prawn-peeling workers had not worn protective gloves
in the past, causing an itchy symptom on their hands, so some of
the workers used chloromycetin (chloramphenicol) to treat their hands
in
order to avoid the itching, and, as a result, the prawns were
polluted".
The 2002 FDA report regarding chloramphenicol testing in imported
seafoodref
contains this discussion: "Until recently, the sensitivity of the
methodology
to detect chloramphenicol in shrimp could find the drug down to 5 parts
per billion (ppb). Recently, Canada, and the European Union (EU), have
refined their methods to detect even lower levels, and, have taken
action
on food products from China and Viet Nam found to be contaminated by
chloramphenicol.
The FDA has modified its methodology to confirm chloramphenicol levels
in shrimp and crayfish to 1ppb and is further modifying the methods to
detect 0.3 ppb, which will place the U.S. methodology in line with
Canada
and the EU. The new methodology for testing for chloramphenicol to the
level of 1 ppb will be used to test imported shrimp and crayfish that
are
suspected to contain chloramphenicol. FDA will detain, and refuse entry
to, any product it identifies, and confirms, as containing
chloramphenicol".
On 5-6 Jun 2002, a senior delegation of Chinese officials met with the
FDA to discuss the issue of chloramphenicol residues in shrimp and
crayfish.
The delegation informed the FDA that, on 5 Mar 2002, China banned the
use
of chloramphenicol in animals and animal feeds. They also informed
the FDA that they are initiating testing of shrimp, crayfish, and other
animal-derived foods intended for export, to ensure the absence of
chloramphenicol
and other drug residues. The FDA and China exchanged information on
testing
methodologies. The FDA informed the Chinese officials that the Agency
would
take enforcement action against products found to be in violation.
tiamphenicol
florfenicol (Aquaflor®
and Nuflor®)
pleuromutilin (Econor®)
:
a natural antibiotic diterpene that binds to the ribosomal
peptidyl
transferase centre (PTC) of the 50S ribosomal subunit with its
tricyclic
mutilin core positioned in a tight pocket at the A-tRNA binding siteref
and interacts with domain V of 23S RNAref.
It
is effective against resistant mycoplasma infection in
immunocompromised
patientsref
azamulin
[14-O-(5-(2-amino-1,3,4-triazolyl)thioacetyl)-dihydromutilin]
is an azole derivativeref
tiamulin / 81.723 HFU is used
in the control
and treatment of veterinary gram-positive and gram-negative pathogens,
with a particular emphasis on infections in swineref.
It
has exceptional activity (MIC < 1 µg/ml) against anaerobic
bacterial species, intestinal spirochetes, and Mycoplasma sppref
nocathiacins are cyclic
thiazolyl peptides
with inhibitory activity against gram-positive bacteria
BMS-249524 (nocathiacin I), identified from screening
a library
of compounds against a multiply antibiotic-resistant Enterococcus
faecium
strain, was used as a lead chemotype to obtain additional structurally
related compounds
2 more water-soluble derivatives, BMS-411886 and BMS-461996ref
The 23S rRNA A2058G alteration mediates macrolide,
lincosamide,
and streptogramin B resistance in the
bacterial
domain and determines the selectivity of macrolide antibiotics for
eubacterial
ribosomes, as opposed to eukaryotic ribosomes. However, this mutation
is
associated with a disparate resistance phenotype: it confers high-level
resistance to ketolides in mycobacteria but only marginally affects
ketolide
susceptibility in streptococci. Mutational alteration of the
polymorphic
2057-2611 base pair from A-U to G-C in isogenic mutants of Mycobacterium
smegmatis
significantly affects susceptibility to ketolides but does
not influence susceptibility to other macrolide antibiotics. In
addition,
the 2057-2611 polymorphism determines the fitness cost of the 23S rRNA
A2058G resistance mutation. Polymorphic nucleotides mediate the
disparate
phenotype of genotypically identical resistance mutations and provide
an
explanation for the large species differences in the epidemiology of
defined
drug resistance mutationsref.
tetracyclines (bacteriostatic)
: products of the aromatic poliketide biosynthetic pathway in Streptomyces,
act
by binding the 30S subunit and blocking the binding of aminoacyl tRNA
to
the A site on the ribosome. As most Bacteria possess an active
transport
system for tetracycline that allows intracellular accumulation of the
antibiotic
at concentrations 50 times as great as that in the medium, a blood
level
which is harmless to animal tissues can halt protein synthesis in
invading
Bacteria.
doxycycline / doxycyclin
(Bassado®,
Doxymycin®, Doryx®, Vibra®,
Vibra-Tabs™,
Vibramycin®,; low-dose oral formulation for
dermatology : Oracea®) does not cause the
photosensitizing
reaction that may occur with conventional tetracycline. Divalent
cations,
gluten products, and calcium do not materially interfere with its
absorption.
Since doxycycline is a highly lipid-soluble antimicrobial, a loading
dose
is necessary for optimal results. Therefore, for moderate or severe
infections,
the usual dose, given intravenously or orally, should be doubled for 72
hours and then reduced to the usual dose (ie, 200 mg every 12 hours
reduced
to 100 mg every 12 hours). The entire dose (intravenous or oral) may be
given once daily. Doxycycline should be taken with food and should not
be given to pregnant patients or young children
lymecycline (Tetralysal®)
methacycline (Rondomycin®)
minocycline (Minocin®,
...)
is 10-folds more lipid-soluble than conventional tetracycline whereas
doxycycline is only 5-folds more lipid-soluble. The clinical importance
of this characteristic is that minocycline has particularly good tissue
penetration and excellent CNS penetration. It is effective also against
MRSA. Food and divalent cations interfere minimally or not at all with
oral absorption, and photosensitizing reactions are rare. Because of
its
high lipid-solubility, the drug is maintained in high concentrations in
middle ear fluid; thus, it has been implicated in vestibular side
effects.
It should not be given to pregnant patients or young children.
Minocycline-induced
hyperpigmentation can be severely disfiguring and is more likely to
occur
in certain populations of patients (e.g., those with pemphigus,
pemphigoid,
or atopic dermatitis). It is important to recognize this condition
early
and offer an alternative treatment, since symptoms can take months to
years
to resolve once the drug is withdrawn. There are 4 types of
minocycline-induced
cutaneous hyperpigmentationref:
type I occurs on the face within inflammatory tissue
type II occurs on the arms and legs in a circumscribed distribution
type III appears diffusely muddy-brown on sun-exposed skin
Some newly discovered members of the tetracycline family (e.g. chelocardin)
have
been shown to act by inserting into the bacterial membrane, not by
inhibiting protein synthesis.
Side effects : contraindicated
during
pregnancy and before age 8; renal toxicity (75%), hepatotoxicity,
neurotoxicity,
systemic
arterial
hypertension,
hirsutism,
gingival hyperplasia, GI toxicity, Steven-Johnsons's
syndrome
glycylcyclines are
tetracycline derivatives
tigecycline / GAR936 : not
transported
by the tetracycline efflux pumps (Staphylococcus
aureus, including MSSA, GISA, MRSA, Streptococcus pneumoniae,
includnig
PRSP, VRE, Acinetobacter, Bacteroides fragilis,
Acinetobacter,
Enterobacter; inactive against Proteus spp. and
P.aeruginosa).
Serum levels sometimes lower than the MIC, but high tissue distribution
far above the MIC, low inhibitory quotient in the blood but a high
inhibitory
quotient in tissue. Nausea and vomiting is the most commonly reported
adverse
eventref.
Appropriate targets :
peritonitis, but in combination therapy if suspicion of Pseudomonas
involvement (e.g. postoperative peritonitis, peritonitis treated with
antibiotics
before surgery)
nosocomial pneumonia (post-operative pneumonia, early-onset VAP, VAP
due
to Enterobacter, Acinetobacter)
severe community-acquired pneumonia
complicated skin and skin tissue infections (postoperative cellulitis)
infections with resistant Gram-positive pathogens (VRE, MRSA, GISA,
VRSA)
infections with resistant Gram-negative pathogens (Enterobacter,
Acinetobacter)
catheter-related bacteremia ?
endocarditis ?
aminoglycosides have been
introduced
in 1950 (against Gram -ve Bacteria
and just a little Gram +ve Bacteria).
They
bind to the S12 (a.k.a. P10) protein in the 30S subunit of the
bacterial
ribosome blocking the binding of initiator N-fMet- tRNAMet
to the ribosome and preventing the normal dissociation of ribosomes
into
their subunits, leaving them mainly in their 70S form, impairing
polysomes
formation. It stabilizes aa-tRNA on the ribosome both with a cognate
and
with a near-cognate codon in the A site by altering the rates of GTP
hydrolysis
by elongation factor Tu (EF-Tu), resulting in almost identical rates of
GTP hydrolysis and virtually complete loss of selectivity. The
difference
in spelling (-micin or -mycin) reflects the isolation
from
Streptomyces
spp. or Micromonospora spp., respectively. They can be
classified
according to their aminocyclitol :
gentamicin
sulfate (Gentalyn®, Garamycin®, Genoptic®,
Gent-AK®, Gentacidin®, ...)
: broad spectrum. Gentamicin surgical implant is a biodegradable
leave-behind
implant impregnated with gentamicin, and is indicated as an adjunct to
systemic antibiotic therapy for the treatment and prevention of
post-surgical
acquired infection in both hard and soft tissues. The product was
developed
using Innocoll's proprietary collagen-based technology, CollaRx®,
and has been approved in 49 countries. It is marketed under the
following
different trade names: Collatamp®
G, Collatamp® EG, Sulmycin®
Implant, Garamycin® Schwamm,
Duracol®, Duracoll®,
Gentacol®, Gentacoll®,
Garacol®, Garacoll®
and Cronocol® in Europe,
Central
and South America, Middle East, Africa and Asia
only topical PO use before GI tract surgery (no if hemorrhages are
suspected
!) : very toxic when administered IV !
kanamycin
sulfate (Kantrex®) : restricted spectrum, but if given
IV
it is effective even against Staphyloccous
aureus
intermediate spectrum
neomycin
sulfate (Mycifradin®, Neo-Fradin®;
Neosporin G.U. Irrigant® in
combination
with polymixin B; Neosporin®
in combination with bacitracin and polymixin
B; Neosporin® in combination with gramicidin
and polymixin B) or undecylenate
paramomycin (Humatin®)
:
effective even against Staphyloccous aureus
broad spectrum
amikacin / BBK8 (Amikin®)
netilmicin (Netromycin®)
:
semisynthetic
sisomicin / thiostrepton
(Siomycin®)
derived from Micromonospora inyoensis, closely related to the C1a
component of the gentamicin complex; it is bactericidal for many
gram-negative
and some gram-positive organisms, having a range of activity similar to
that of gentamicin.
sisomicin sulfate : the sulfate salt of sisomicin,
used in the treatment
of infections caused by susceptible gram-negative organisms;
administered
intravenously or intramuscularly.
Resistance genes : aminoglycoside
acetylases
(AAC), adenylylases (AAD), and phosphorylases (APH).
Side effects :
reversible acute
renal failure
lasting up to 20 days after suspension (evaluate [Ala-aminopeptidase]urine]
damage to the vestibulocochleary (auditory) nerves => permanent deafness
and/or temporaneous dizziness lasting 2-6 months. gentamicin-induced
hearing
loss averages 8% for a short course of therapyref
but may be higher in developing countries, where aminoglycosides are
frequently
the only affordable antibiotics and are sold over the counter. No
therapy
presently exists to prevent ototoxicity. Animal models suggest that
ototoxicity
is caused by reactive oxygen species and is attenuated by antioxidantsref.
Salicylate
is a clinically promising antidoteref
that can be administered as aspirin. 195 patients received 80 to 160 mg
of gentamicin twice daily by intravenous infusion (generally for 5 to 7
days) and were randomly assigned to receive 14 days of supplementation
either with 3 g of aspirin per day, divided into 3 doses (89 patients),
or with placebo. The incidence of hearing loss in the placebo group was
within the anticipated range (13%) but was significantly lower in the
aspirin
group (3%). The efficacy of the gentamicin therapy was not affected by
the administration of aspirin. However, gastric symptoms were more
common
in the aspirin groupref.
oxazolidinones (introduced
in 2000)
inhibit the bacterial pre-translational initiation complex formation
=>
bacteriostatic
linezolid (Zyvox®)
i.v. and
p.o. Side effects : thrombocytopenia,
hyperlactatemia,
metabolic acidosis, and peripheral neuropathy are adverse effects
related
to the drug's capacity for interference with mitochondrial functionref;
efficacy
for bacteremia/endocarditis not demonstrated
hexamethylenamine / hexamine / methenamine mandelate and
hippurate
(Urex®, Hiprex®, Mandelamine®)
:
the compound decomposes in water at acidic pH according to the
following
reaction :
quinolones have been introduced
in 1962
(bactericidal against Gram
-ve Bacteria) at low doses inhibit the religation of the
doubly cleaved DNA whose 5' ends are tethered on 2 Tyr residues in type
II bacterial topoisomerases [both DNA gyrase (1 Tyr per GyrA
subunit
in the active (GyrA)2(GyrB)2 tetramer) and DNA
topoisomerase
IV], while at high doses (e.g. those present in urine) inhibit N-methyltransferase
1st generation quinolones : urinary
antiseptic, uneffective
against Pseudomonas aeruginosa
2nd generation quinolones : urinary
antiseptic, effective
even against Pseudomonas aeruginosa
cinoxacin (Cinobac®,
Cinoxacin®)
flumequine
novobiocin (Albamycin®)
binds
the B subunit of DNA gyrase inhibiting ATP hydrolysis
pipemidic acid (Dolcol®,
Pipram®)
rosoxacin (Eradacil®)
3rd generation / 6-fluoroquinolones
(FQ) : systemic distribution (expecially used against bacterial
respiratory
and UTIs, prostatitis, osteomyelitis,
and Salmonella typhi).
Fluoroquinolones, broad-spectrum antibiotics that are widely perceived
to have favorable adverse-effect profiles, have become the most
prescribed
antibiotics in the USAref.
From
1995 to 2002, the number of fluoroquinolone prescriptions in the USA
increased by a factor > 3, reaching about 22 million prescriptions
per
yearref.
The
available fluoroquinolones have well-established differences in
antimicrobial
activity, but their disparate adverse-effect profiles are increasingly
being recognized. Serious adverse events have led to the withdrawal or
restriction of several fluoroquinolones in recent yearsref
ciprofloxacin (Ciloxan®,
Cipro®, Ciproxin®) : PO, i.v.. In
European
ICUs it is effective against 89% of MSSA, 7% of MRSA, 92% of E.coli,
78%
of Enterobacter spp., and 73% of P.aeruginosaref.
Ciprofloxacin
is absorbed from the gastro-intestinal tract. Oral bioavailability
is approximately 70% and a peak plasma concentration is achieved 0,5 to
2 hours after oral dosing. Absorption may be delayed by the presence of
food, but is not substantially affected overall. The plasma half-life
is
about 3,5 to 4,5 hours and there is evidence of moderate accumulation.
Half-life may be prolonged in severe renal failure and to some extent
in
the elderly. Plasma protein binding ranges from 20 to 40%.
Ciprofloxacin
is widely distributed in the body and tissue penetration is extensive.
It appears in the cerebrospinal fluid, but the concentrations are only
about 10% of those in the plasma when the meninges are not inflamed.
Ciprofloxacin
crosses the placenta, and is distributed into the breast milk. High
concentrations
are achieved in the bile. Ciprofloxacin is eliminated principally by
urinary
excretion, but non-renal clearance may account for about a third of
elimination
and includes hepatic metabolism, biliary excretion, and possibly
transluminal
secretion across the intestinal mucosa. Urinary excretion is by active
tubular secretion as well as glomerular filtration and is virtually
complete
within 24 hours. About 40 to 50% of an oral dose is excreted unchanged
in the urine and about 15% as metabolites Faecal excretion over 5 days
has accounted for 20 to 35% of an oral dose. At least 4 active
metabolites
have been identified. Oxociprofloxacin appears to be the major
urinary
metabolite, and sulphociprofloxacin is the primary faecal
metabolite.
Only small amounts of ciprofloxacin are removed by haemodialysis or
peritoneal
dialysis. Polymorphism of the mexR gene which is involved in the
resistance
to drugs like ciprofloxacin. Mutations in mexR result in increased
resistance
to multiple antibiotics due to overexpression of this efflux system.
The
MexR product contains 147 amino acids with a molecular mass of 16,964
Da.
ofloxacin (Floxin®,
Ocuflox®,
Tarivid®)
long-acting (1 / die) and broad spectrum
fleroxacin (Megalone®)
lomefloxacin (Maxaquin®)
pefloxacin (Peflocin®)
temafloxacin (Omniflox®),
recalled
because of hemolysis, renal failure, and hypoglycemiaref
(Rubinstein E. History of quinolones and their side effects.
Chemotherapy
2001;47:Suppl 3:3-8, 44)
uvofloxacin
clinafloxacin
difloxacin (Dicural®)
enrofloxacin for veterinary
use
garenofloxacin
gatifloxacin (Tequin®)
:
limited data suggest that as compared with other currently available
fluoroquinolones, gatifloxacin (Tequin, Bristol-Myers Squibb) may be
uniquely
associated with increased risks of both hypoglycemia and hyperglycemiaref1,
ref2,
ref3,
ref4,
ref5,
ref6,
ref7,
ref8,
ref9,
ref10,
ref11,
ref12,
ref13,
ref14,
ref15
(Tailor SA, Simor AE, Cornish W, Phillips E, Knowles S, Rachlis A.
Analysis
of spontaneous report of hypoglycemia and hyperglycemia associated with
marketed systemic fluoroquinolones made to the Canadian Adverse Drug
Reaction
Monitoring Program. Can J Hosp Pharm 2004;57:12-17; Frothingham R.
Gatifloxacin
associated with a 56-fold higher rate of glucose homeostasis
abnormalities
than comparator quinolones in FDA Spontaneous Reporting Database. In:
Program
and abstracts of the 44th Interscience Conference on Antimicrobial
Agents
and Chemotherapy, Washington, D.C., October 30–November 2, 2004.
Washington,
D.C.: American Society for Microbiology, 2004:19; Létourneau G,
Morrison H, McMorran M. Gatifloxacin: hypoglycemia and hyperglycemia.
Can
Adverse React Newsl 2003;13(3):1-2). Although the mechanism of these
apparently
competing adverse effects is not fully understood, studies in animals
suggest
that although gatifloxacin can promote insulin release and hypoglycemia
by blocking the ATP-sensitive potassium channels of pancreatic islet
cells,
it can also trigger the vacuolation of pancreatic b
cells, leading to reduced insulin levels and hyperglycemiaref1,
ref2,
ref3,
ref4.
Evidence
that gatifloxacin causes dysglycemic effects in humans consists
of data from case reports, small studies in healthy volunteers or
hospital
inpatients, and one small post-marketing studyref1,
ref2,
ref3,
ref4,
ref5
(Grasela DM, Lacreta F, Kollia G, Randall D, Stoltz R, Berger S. Lack
of
effect of multiple-dose gatifloxacin (GAT) on oral glucose tolerance
(OGTT),
glucose and insulin homeostasis, and glyburide pharmacokinetics (PK) in
patients with type II non-insulin-dependent diabetes mellitus (NIDDM).
In: Program and abstracts of the 39th Interscience Conference on
Antimicrobial
Agents and Chemotherapy, San Francisco, September 26–29, 1999.
Washington,
D.C.: American Society for Microbiology, 1999:11; Schwarzbard L, Lodise
TP, Lomaestro BM, Smith R. Comparison of glucose intolerance (GI)
between
gatifloxacin (G) and levofloxacin (L) in elderly, hospitalized
patients.
In: Program and abstracts of the 45th Interscience Conference on
Antimicrobial
Agents and Chemotherapy, Washington, D.C., December 16–19, 2005.
Washington,
D.C.: American Society for Microbiology, 2005:463). These studies
yielded
conflicting conclusions regarding the effects of gatifloxacin on blood
glucose levels, but some reports strongly suggest the existence of a
causal
relationref.
For
example, one recent report described two patients in whom profound
hyperglycemia (glucose, 942 to 1456 mg/dl) developed shortly after
gatifloxacin
therapy but who had no subsequent evidence of diabetesref.
The
use of gatifloxacin among outpatients is associated with an increased
risk of in-hospital treatment for both hypoglycemia and hyperglycemia :
so it should not be used in diabetics and other high risk patients)ref
gemifloxacin mesylate
(Factive®)
grepafloxacin (Raxar®)
:
recalled because of QT-interval prolongationref1,
ref2
(Rubinstein E. History of quinolones and their side effects.
Chemotherapy
2001;47:Suppl 3:3-8, 44)
levofloxacin (Levaquin®,
Quixin®, Tavanic® in Europe, Cravit®
in Asia) (i.v.)
marbofloxacin for
veterinary use
moxifloxacin (Avelox®,
Avalox®) (i.v.) has recently shown promise in a murine
model
of Mycobacterium
tuberculosisref
sparfloxacin (Spara®,
Zagam®) : recalled because of QT-interval prolongationref1,
ref2
(Rubinstein E. History of quinolones and their side effects.
Chemotherapy
2001;47:Suppl 3:3-8, 44)
tosufloxacin
trovafloxacin (Trovan®)
:
recalled because of hepatotoxicityref1,
ref2.
ABT-492
Side effects :
fluoride causes cartilage alterations (use is forbidden during
pregnancy
and in children) => bilateral acute or chronic Achilles
calcaneal tendinitis
=> tendon rupture, more common in patients over 60 years of age. The
latency
period between the start of treatment and the appearance of the first
symptoms
range from 1 to 510 days with a median of 6 days. Most patients recover
within 2 months after cessation of therapy, but 26% have not yet
recovered
at followup.
relapse in patients who suffered juvenile epilepsy
photosensitivity (use sunglasses)
neurologic impairment
incidence of convulsions and anxiety due to action as GABAA
antagonists
nausea and vomiting
Simultaneous administration of antacids
containing magnesium
or aluminium
and ciprofloxacin or other quinolones decreases the gastrointestinal
absorption
of those antibacterial agents due to drug-cation chelationref.
rifampin (Rifadin®,
Rimactane®)
is a semisynthetic derivative of rifamycin B active against
Gram +ve Bacteria, Mycobacterium
tuberculosis
and some Gram -ve Bacteria.
Rifampicin
acts quite specifically against the b
subunit
of the bacterial RNA polymerase and apparently blocks the entry of the
first nucleotide which is necessary to activate the polymerase. It is
effective
orally and crosses the blood-brain barrier, so it is useful for
treatment
of bacterial meningitis.
CBR703 series compounds inhibit known catalytic activities
of RNAP
(nucleotide addition, pyrophosphorolysis, and Gre-stimulated transcript
cleavage) but not translocation of RNA or DNA when translocation is
uncoupled
from catalysis.
While screening for a new broad-spectrum antibiotic, J&J
researchers
discovered that a class of compounds called diarylquinolines
worked
against
Mycobacteria smegmatis : chemical tinkering led them to
the even more potent R207910. It potently inhibits both drug-sensitive
and drug-resistant
Mycobacterium tuberculosis in vitro (MIC 0.06
µg/ml). In mice, R207910 exceeds the bactericidal activities of
isoniazid
and rifampin by at least 1 log. As expected, resistance to R207910
developed
when given to mice as a monotherapy, but the J&J team's experiments
with mice have convinced leading TB researchers that swapping the drug
for 1 of the 3 in the most popular triple-drug combination now used
would
delay development of resistant strains. Substitution of drugs included
in the WHO's first-line tuberculosis treatment regimen (rifampin,
isoniazid
and pyrazinamide) with R207910 accelerates bactericidal activity,
leading
to complete culture conversion after 2 months of treatment in some
combinations,
about half the time it takes using the standard treatmen. A single dose
of R207910 inhibits mycobacterial growth for 1 week. Plasma levels
associated
with efficacy in mice are well tolerated in healthy human volunteersref.
Human
versions of the synthase are not affected by the drug and initial
studies in humans show that injections are safe, at least for short
periods
of time. Trials in people who are actively sick are now under way,
although
it will be many years before the drug makes it to the market. One of
the
drugs in the standard tuberculosis cocktail does not mix well with many
HIV drugs, but a regimen with compound J would be fine. Another
potential
bonus is that the compound may be useful against latent tuberculosis,
as
it kills even when the bacteria are not actively reproducing. Although
the outbreaks of multidrug-resistant tuberculosis (MDR-TB) that
afflicted
New York City in the 1990s were relatively minor when compared to the
burden
of global tuberculosis [HN1]ref1,
ref2,
they
served to raise public and political awareness. The result was that
for the first time TB control was included on the agenda of the G8
economic
summit meetings. The world's leaders lent their support to that of
nongovernmental
organizations, such as the Global Alliance for TB Drug Development
(GATDD)
and the WHO, by encouraging industry and academia to engage in the
development
of new drugs to treat this chronic respiratory disease. This was a
crucial
event given that TB claims up to 2 million lives annually worldwide,
blights
myriad communities principally in developing countries, and that no new
TB drugs have been discovered in the past 40 yearsref.
The
current treatment for TB recommended by WHO--known as directly observed
therapy short-course (DOTS)--requires patients to adhere to a 3- or
4-drug
regimen comprising isoniazid, rifampin, pyrazinamide, and/or ethambutol
for a minimum of 6 months. Many patients fail to complete therapy
because
of drug side effects and the complicated drug regimen, resulting in
relapse--often
in the form of MDR-TB, which is even more difficult to treat. An ideal
new TB drug should be highly active, so that treatment duration can be
reduced to <3 months; it should kill the persistent bacilli that
might
otherwise reactivate later in life; and it must show activity against
MDR-TB
strains. Optimally, a new therapeutic agent would be specific for Mycobacterium
tuberculosis and also compatible with existing TB drugs, because
combination
therapy will remain mandatory to combat this major killerref.
Its
lead compound was identified by adopting a medium-throughput screening
approach using live mycobacteria rather than the more popular
target-based,
high-throughput screening that uses robotics to screen millions of
compounds
for inhibitors of critical functions such as key enzyme activities.
This
proved a very astute decision because it avoided problems with drug
permeability
(which always affect the target-based screens at a later stage) by
identifying
active compounds that freely entered the mycobacteria. After
optimization
by synthetic chemistry, the investigators were left with 20 interesting
drug candidates; of these, R207910 showed the best activity profile.
R207910
is bactericidal and exquisitely active against a broad range of
mycobacteria
[HN11], displaying little or no activity against the other
microorganisms
tested. Crucially, R207910 is active against both the drug-sensitive
and
drug-resistant forms of M. tuberculosis. This organic compound
of
555.51 daltons, which contains both planar hydrophobic moieties and
hydrogen-bonding
acceptor and donor groups, displays perfect drug-like features that
satisfy
most of Lipinski's rules for good drug candidatesref.
Pharmacokinetic
and pharmacodynamic studies in different animal models
have confirmed the excellent drug-like properties of diarylquinolines.
To identify the target of R207910, mutants of M. tuberculosis
were
isolated and the related faster-growing organism M. smegmatis
that
were resistant to R207910, and characterized by whole-genome
sequencing.
2 different missense mutations in the atpE gene, which encodes the C
subunit
of ATP synthase, the enzyme that uses the transmembrane proton-motive
force
to generate ATP for the cellref.
Model of the mycobacterial ATP synthase showing the position of
mutations
that confer resistance to the diarylquinoline drug R207910ref.
ATP
synthase has 2 major structural domains, F0 and F1,
that
act as a biological rotary motorref.
F1 is composed of 9 subunits (a3,
b3,
g,
d,
e)
and is located in the cytoplasm, where it generates ATP. F0
spans the cytoplasmic membrane and contains 13 to 15 subunits (a, b2,
c9-12) arranged as a symmetrical disc. The F0 and
F1 domains are linked by subunits
g,
e,
d,
and b2. Rotation of the transmembrane disc and the central
stalk
is driven by the proton-motive force. The c subunit is an a-helical
hairpin structure with a short connecting loop. Notably, the A63P
mutation
is very near E60, the glutamic acid residue whose carboxyl group is
protonated
during proton translocation. The proton-motive force fuels the rotation
of the transmembrane disk and the central stalk, which in turn
modulates
the nucleotide affinity in the catalytic b
subunit,
leading to the production of ATP. The c subunit has a hairpin structure
with 2 a helices and a short connecting
loop.
The 2 mutations affect the membrane-spanning
a
helices of the ATP synthase c subunit and may restrict binding of
R207910
to the enzyme. Although biochemical confirmation is now required, it is
possible that the drug impedes assembly of the mobile disk or
interferes
with its rotational properties, leading to inadequate synthesis of ATP.
A puzzling feature of R207910 is its exceptional specificity for
mycobacteria.
ATP synthase is a ubiquitous enzyme found in most living organisms,
including
humans. There is very limited sequence similarity between the
mycobacterial
and human AtpE proteins, which bodes well for the safety of the
compound,
as borne out by the phase I study in human volunteers. The
mycobacteria-specific
activity of R207910ref
may also be the consequence of limited sequence similarity among
bacterial
AtpE proteins. However, those antitubercular agents that show highly
restricted
activity (such as isoniazid, ethionamide, and pyrazinamide) are all
prodrugs
requiring activation by a mycobacterial enzymeref.
Although
its chemical structure gives no clues to potential activation
sites, R207910 may also prove to be a prodrug. Mouse studies already
show
that this compound can greatly shorten the duration of therapy, both
alone
and in association with current antitubercular agents. Furthermore, the
equally remarkable activity of R207910 against M. ulcerans--the
agent of an emerging human disease called Buruli ulcerref,
for
which surgery is the only cure--also raises expectations for a safer
treatment for this disfiguring afflictionref.
sulfonamides (bacteriostatic).
They were introduced as chemotherapeutic agents by Domagk,
Mietsch and Klarer in 1935, who showed that one of these compounds (the
substituted
sulfanilamide ...
... derived from the intracellular degradation of the bacterial stain
4-sulfonamide-2',4'-diaminobenzol or red Prontosil ...
...) had the effect of curing mice with infections caused by
b-hemolytic
Streptococcus
spp.. Chemical modifications of the compound sulfanilamide gave
compounds
with even higher and broader antibacterial activity. Bacteria
which
are almost always sensitive to the sulfonamides include Gram
+ve Streptococci (b-hemolytic
Streptococci
and
Streptococcus pneumoniae (even if some Streptococci can
assume
folate from the environment, bypassing the synthesis blockage)) and Gram
-ve Bacteria (E. coli, Neisseria meningitidis).
They
cross the blood-brain barrier.
rapidly absorbed and rapidly eliminated sulfonamides
sulfisoxazole diolamine (Gantrisin®,
...; Pediazole®
in combination with erythromycin ethylsuccinate for otitis media; ? in
combination with phenazopyridine for
UTIs)
sulfacetamide (AK-Sulf®, Bleph-10®,
Cetamide®, Isopto Cetamide®, Klaron®,
Sebizon®, Sodium Sulamyd®, Sulf-10®,
Sultrim®... ; Sulfacet-R® in combination
with sulfur)
silver sulfadiazine (SSD) (SSD®,
Silvadene®,
...)is the most commonly used topical antibacterial agent for the
treatment
of burn wounds. It has many clinical advantages, including a broad
spectrum
of antimicrobial activity, low toxicity, and minimal pain on
application.
The current formulation of silver sulfadiazine contains a lipid soluble
carrier, polypropylene glycol, that has certain disadvantages,
including
pseudo-eschar formation and the need for twice daily application. A new
formulation of silver sulfadiazine in a water soluble gel, poloxamer
188,
can be applied once a day and its water solubility allow easy
application
and removal. Silver compounds are used widely as effective
antimicrobial
agents to combat pathogens (bacteria, viruses and eukaryotic
microorganisms)
in the clinic and for public health hygiene. Silver cations (Ag+)
are microcidal at low concentrations and used to treat burns, wounds
and
ulcers. Ag is used to coat catheters to retard microbial biofilm
development.
Ag is used in hygiene products including face creams, "alternative
medicine"
health supplements, supermarket products for washing vegetables, and
water
filtration cartridges. Ag is generally without adverse effects for
humans,
and argyria
is rare and mostly of cosmetic concern.Resistance to silver compounds
as
determined by bacterial plasmids and genes has been defined by
molecular
genetics. Silver resistance conferred by the Salmonella plasmid
pMGH100 involves nine genes in three transcription units. A
sensor/responder
(SilRS) two-component transcriptional regulatory system governs
synthesis
of a periplasmic Ag(I)-binding protein (SilE) and two efflux pumps (a
P-type
ATPase (SilP) plus a 3-protein chemiosmotic RND Ag(I)/H+ exchange
system
(SilCBA)). The same genes were identified on five of 19 additional IncH
incompatibility class plasmids but thus far not on other plasmids. Of
70
random enteric isolates from a local hospital, isolates from catheters
and other Ag-exposed sites, and total genomes of enteric bacteria, 10
have
recognizable sil genes. The centrally located 6 genes are found and
functional
in the chromosome of Escherichia
coliK-12,
and also occur on the genome of E. coli O157:H7. The use of
molecular
epidemiological tools will establish the range and diversity of such
resistance
systems in clinical and non-clinical sources
sulfadoxine (Fansidar®
in combination with pyrimethamine)
sulfamazole
sulfamazone
sulfamethizole (Thiosulfil Forte®)
sulfametopirazine
sulfametoxypiridazine
sulfametrol
succinylsulfathiazole
Side effects : renal and hepatic
toxicity
(they may cause kernicterus in newborns by displacing bilirubin
from plasma proteins in the face of increased bilirubin production from
fetal erythrocyte turnover, decreased bilirubin conjugation, acidosis,
and decreased blood-brain barrier), agranulocytosis, thrombocytopenia,
acquired
aplastic anemia,
hemolytic anemia in G6PD- patients, GI toxicity, Steven-Johnsons's
syndrome
=> Lyell's
syndrome.
p-aminosalicylic
acid
(PAS) competes with p-aminobenzoic acid (PABA)
pyrimethamine / 2,4-diamino-5-(p-chlorophenyl)-6-ethyl-
pyrimidine (Fansidar® in combination with sulfadoxine;
Maloprim®, Deltaprim® in combination with
dapsone)
tetroxyprim
bacterial DHF
reductase
inhibitors :
trimethoprim (TMP) (Trimplex®,
Proloprim®, ...) (bacteriostatic)
:
it is often administered together with
bacteriostatic
sulfamethoxazole
as co-trimoxazole / cotrimoxazole /
TMP/SMX (Bactrim®, Cotrim®, Cofatrim®,
Primsol®, Septra®, ...), becoming bactericidal
against Gram -ve Bacteria;
Polytrim®
in combination with
polymyxin B
icloprim
albomycin is an analog of
ferrichrome, made
by some Fungi.
ClpP (a core unit of a major bacterial protease complex)
inhibitors
: acyldepsipeptides have antibacterial activity against
Gram-positive
bacteria in vitro and in several rodent models of bacterial
infection.
The acyldepsipeptides are active against isolates that are resistant to
antibiotics in clinical application. Clp is usually tightly regulated
and
strictly requires a member of the family of Clp-ATPases and often
further
accessory proteins for proteolytic activation. Binding of
acyldepsipeptides
to ClpP eliminates these safeguards. The acyldepsipeptide-activated
ClpP
core is capable of proteolytic degradation in the absence of the
regulatory
Clp-ATPases. Such uncontrolled proteolysis leads to inhibition of
bacterial
cell division and eventually cell deathref
diphenyl urea
caragenin
LN-I-284
PZ-601
ME-1036
D-159a
igromycin A
cethromycin
BAL 3076 (monobactam + b-lactamase
inhibitor)
friulimicin
SASP
CBR-2092 : rifamicin SV + fluoroquinolone
Adverse events :
direct toxicity
cardiac effects - prolongation of the QTc intervalref
renal toxicityref1,
ref2.
Very
ill patients may have impaired absorption, altered clearance due to
renal dysfunction (increased risk of adverse events, increased
antibiotic
doses are often required in burn patients)ref
superinfection
antibiotics can change the normal microbial floraref,
allowing
overgrowth of opportunistic infections (e.g. Candida spp.
in the gastrointestinal tract)ref
Leading parenteral antibiotic products in the global hospital market
for
prophylaxis and therapy in USA and 5 European countries
Current status of antibacterial resistance in the ICU (NNIS, 2002 vs
1997-2001)ref
:
The quantity of antimicrobials used in food animals in Denmark has
declined 54% from peak use between 1994 and 2001. Before the programme
began, most pigs and broiler chickens in Denmark were given
antimicrobials,
such as avilamycin, avoparcin, tylosin, streptogramins
and virginiamycin, for most of their lives. After withdrawal,
average
use declined to 0.4 days in broiler chickens (with life span of around
42 days) and 7.9 days in pigs (with life span of around 170 days). Pork
production
in Denmark has continued to increase, and effects on poultry production
were small. Ending the use of the above antimicrobials has greatly
reduced
the reservoir of resistant Enterococcus
faecium
in the food animal reservoir, thus reducing the reservoir of resistance
genes. For example, resistance to avilamycin, avoparcin, and
streptogramins
in Enterococcus faecium isolates from broiler chickens declined
from 60-80% before withdrawal of antimicrobials to only 5-35% after.
The carboxylic ionophoresref
are open-chained oxygenated heterocyclic rings with a single terminal
carboxyl
group of moderate molecular weight (200-2000). It is a drug for use in
animals only, and there is no comparable drug or drug category for
humans.
Ionophores form lipid-soluble complexes with polar cations (K+,
Na+, Ca2+ and Mg2+), have a diverse
antibacterial
spectra and are produced by fungi, predominantly Streptomyces
sp.
These compounds are used as anticoccidial and growth promotant feed
additives.
Clinical pathology of ionophore-induced toxicityref1,
ref2,
ref3,
ref4,
ref5
includes elevated enzyme levels of muscle origin such as aspartate
transaminase
(AST) and creatine phosphokinase (CPK). Other serum enzymes that may be
elevated are lactic dehydrogenase (LDH) and alkaline phosphatase.
Additonally,
there may be elevations in blood urea nitrogen and bilirubin. Serum
calcium
and potassium levels may fall to life-threatening levels in horses.
Hemoconcentration
may also occur. The ionophores are generally safe at prescribed levels
in intended species. Certain management situations increase the
possibility
of toxicoses including overdose, mixing errors, premix consumption, and
misuse in non-target species such as horses, adult turkeys, and dogs.
Concurrent
administration of other drugs, including chloramphenicol, erythromycin,
sulfonamides and cardiac glycosides, can potentate ionophore toxicosis.
calcium ionophores
clearly have effects in human cells. Binding of calcium can produce the
signs and symptoms of hypocalcemia
and can upregulate or downregulate cellular functions based on the role
of calcium in such processesref1,
ref2.
lasalocid / X-537A is a divalent
ionophore
used in broiler chickens (Avatec®) for the prevention of
coccidiosis caused by Eimeria sp. and in cattle (Bovatec®)
for
improved feed efficiency and increased rate of weight gain. It gets
into laying hens and consequently eggs through batches of chicken feed
which have been contaminated by accident : 12% of UK eggs tested
contained
residues. It is unclear if the levels in the eggs would cause clinical
or subclinical effects in humans. However, rules of the European Union
have banned lasalocid from being added to feed that is given to laying
hens. Although this problem may have existed before, the maximum level
of lasalocid reported in eggs has risen significantly over the past
year
from 620 mg/kg in 2002 to 3450 in 2003. 2
of
the 250 samples contained levels above 3000 mg/kg.
People
with cardiac arrhythmia, children, and adults who eat 3 or 4 eggs
a day are most at risk from the drug (babies under 6 months should not
be fed eggs because of the potential risk of allergic reactions), which
has been linked to increased heart and breathing rates, paralysis and
even
sudden adult death syndrome in poultry. Consumers should be aware of
the
potential danger and limit their daily egg intake. Eat organic if you
can
and certainly give organic eggs to children, and 2 eggs in one day
would
be the maximum you should have
Spray for poultry processing companies to apply to contaminated
surface
of raw poultry :
10% trisodium phosphate (TSP)
0.1% acidified sodium chlorite (ASC)
0.1 and 0.5% cetylpyridinium chloride (CPC) (Cecure®),
used
since the 1930s in mouthwashes and throat lozenges, is effective
against
Campylobacter
jejuniref,
Salmonella
spp.,
Escherichia
coli,
and Listeria spp..
It has no taste or smell, does not change the color of meat, and leaves
a residue on foods only if they contain a lot of surface fat
1% Tween 80
water (50°C at application)
Scientists of the Kosan Bioscience
have overcome an important hurdle in the race to develop new antibiotics:
they
have made bacteria efficiently churn out chemicals that could prove
to be useful drugs. Over the past few decades, bacteria have evolved to
resist our antibiotics. As a result, hospitals have seen a dramatic
rise
in drug-resistant infections, many of which are fatal. To come up with
new antibiotics, scientists often work with the natural chemical
defences
of fungi and bacteria, altering these natural antibiotics to make new
ones.
Researchers have also attempted to genetically engineer bacteria to
pump
out new chemicals directly. Although chemicals produced this way have
not
yet been used to fight human disease, the approach has produced some
promising
compounds, including :
lantibiotics are
ribosomally-synthesised
antimicrobial peptides produced by Gram-positive bacteria that are
characterised
by the presence of lanthionine and/or methyllanthionine
residues.
Other unusual post-translationally modified amino acids, most
frequently
dehydroalanine
and dehydrobutyrine, can also be present. While it has been
frequently
suggested that these peptides have the potential to be utilised in a
wide
range of medical applications, to date no actual therapeutic
applications
have been convincingly described. More recently, however, they have
been
the focus of much attention as a consequence of improved
biotechnological
capabilities, an improved understanding of lantibiotic biosynthesis and
mode of action, and their high specific activity against multi-drug
resistant
bacteria. Rational mutagenesis strategies ('intelligenetics') have been
implemented to alter individual residues with a view to ultimately
widening
the active pH range, improve stability, and enhance binding to cell
wall
targets with the ultimate aim of optimising their antimicrobial
activity.
It is hoped that as a consequence of this improved knowledge the most
suitable
application of individual lantibiotics will become apparent. It should
also prove possible, in the near future, to generate tailor-made
lantibiotics
and utilise biosynthetic enzymes to incorporate modified amino acids
into
non-lantibiotic peptides. In the shorter term, the extensive
characterisation
of lantibiotics will be instrumental in reassuring drug industry
regulators
of their safety and facilitate the widespread application of these
novel
antimicrobial agents in medicineref.
The
antimicrobial action of bacteriocins from Gram-positive bacteria is
based on interaction with the cytoplasmic membrane of sensitive bacteriaref
:
nisin : a cationic, polycyclic
bacteriocin of
34 residues, including several unusual dehydro residues and
thioether-bridged
lanthionines. Models based on studies with artificial membrane systems
propose that it forms wedge-like poration complexes in the membrane by
electrostatic interaction between the positively charged C terminus of
the peptide and anionic membrane phospholipids. Nisin can also
permeabilise
membranes via a targeted mechanism by using lipid II, the
bactoprenol-bound
precursor of the bacterial cell wall, as a docking molecule. Another
consequence
of binding with lipid II is the inhibition of peptidoglycan
biosynthesis.
mersacidine and actagardine
also form a complex with lipid II, but binding only blocks the
incorporation
of lipid II into peptidoglycan, resulting in slow cell lysis rather
than
pore formation.
plantaricin C and pediocin
PD-1 share a conserved sequence motif, which is most probably
involved
in the binding of these bacteriocins to lipid II, with mersacidine and
actagardine. Although pediocin PD-1 and plantaricin C may inhibit
peptidoglycan
biosynthesis, pore formation is rather due to electrostatic interaction
between the positively charged unbridged N-terminus and anionic
phospholipids in the cytoplasmic membrane of sensitive cells.
epilancin 15X, a novel
lantibiotic from
a clinical strain of Staphylococcus epidermidisref
But scientists have stumbled in trying to get bacteria to spit out
chemicals
belonging to a class known as polyketides.
Polyketides are molecules that contain large rings of carbon and oxygen
atoms, and include the well-known antibiotic erythromycin. DNA
sequences
that produce bits of the proteins that make polyketides were taken from
several different bacteria, mixed and matched nside Escherichia
coli
bacteria.
This much has been done before, but the hard part was getting the
resulting
bits of protein to combine into a functioning polyketide-making
machine.
Polyketide proteins are very large, so it is particularly difficult to
get the components to attach together. To achieve this, special
sequences
were added to the ends of their genetic fragments that in turn made the
protein fragments 'sticky'. This meant the protein bits joined up "like
Lego building blocks", resulting in new proteins conformations and new
polyketidesref.
The
team has yet to test whether these polyketides have antibiotic powers.
But they anticipate that at least some will be useful. A few natural
polyketides
attack cancer cells, so some of the bioengineered ones might have
anti-cancer
properties too.
In Africa's ongoing struggle against tuberculosis, a group of
scientists
and industry representatives are now exploring a plan to introduce copper
pipes, doorknobs and work surfaces to the country's waterways and
clinics.
The metal's known antibiotic activity could provide a simple way to
help
fight the deadly infection. Past research has shown that copper has
strong
anti-bacterial properties against worrisome pathogens such as the
superbug
MRSA. Whereas all cells need a bit of copper to grow, an excess can
overwhelm
a cell's mechanism to bind to the metal, effectively killing it from
over-exertion.
MRSA was unable to survive on copper alloy surfaces for > 90 minutes
(Noyce
J. O., Michels H.& Keevil C. W. . J. Hosp. Infect., 63. 289 - 297
(2006)).
Recent research from a team in South Africa shows that copper also
wipes
out the bacterium responsible for tuberculosis (TB) — one of Africa's
biggest
killers. Laboratory tests showed that after 48 hours of exposure, pure
copper and 5 of its alloys could inhibit growth in TB bacteria,
including
strains resistant to usual drugs, with no signs of regrowth over the
study
period of 15 days. TB is an extremely resilient bug. It often grows
back
on, say, a stainless-steel surface that has been cleaned with
disinfectant,
after just a couple of days. So the copper results are promising. Such
results have spurred ideas to make hospital surfaces from copper
alloys,
to help keep background levels of infectious bacteria down. The simple
change has resulted in a consistent and significant reduction in
surface
contamination by Staphylococcus aureus, Escherichia coli
and Pseudomonas aeruginosa. Whether it is the best way to keep
bugs
in check, however, is still up for debate. It can take up to 6 hours
for
copper to kill bacteria, so there remains a window of opportunity when
infection can occur. And TB is transmitted by the inhalation of
airborne
bugs, so self-sanitizing surfaces might not have as big an impact as
hoped
with that disease. But reducing the chance of infection in a country
such
as South Africa, where an estimated 5.3 million people live with HIV
and
are particularly vulnerable to opportunistic infections, may be of
great
benefit. Full water treatment systems are obviously better than copper
alone, as they are designed to address a number of potential problems
with
the water supply. But it's good to have a back-up system. Rural
water-treatment
systems are not always correctly monitored. Here copper would be a good
additional barrier. Representatives from the International Copper
Development Association, along with African industry participants,
engineers and faculty from the Stellenbosch University, gathered at a
workshop
in Johannesburg immediately after the IFIC conference to plan how best
to use copper to fight disease in Africa. They are still at the
planning
stage, but at least one trial will begin before the end of 2006 at the
Kayamandi township clinic outside Stellenbosch. Copper is not the
answer
for everything, but what we are looking at here is copper's role in
making
a significant contribution.
In-vitroantibiotic-induced endotoxin release may depend
on antibiotic class, presence of serum, type of organism, site of
antibiotic
action and Gram-stain. Endotoxin release may be different in late or
early
lysis, proportional to the number of killed pathogens. Morphology of
bacteria
may have an impact on endotoxin release and phagocytosis.
Antibiotic-treated
animals may show higher endotoxin levels with a higher survival rate
than
untreated animals. Plasma endotoxin may increase despite decreasing
bacteremia.
There may be a similar killing rate by different antibiotics but a
difference
in endotoxin release. Intestinal endotoxin does not necessarily
correlate
to the level of gram-negative bacteria. However, the alteration of the
gut content by pretreatment may be associated with reduced endotoxemia
and increased survival. Antibiotic-induced endotoxin release may be
different
depending on the type of infection, the location of infection, the
virulence
of strains, Gram-stain, mode of application and dosage of antibiotic.
Different
antibiotics may induce the release of different forms of endotoxin
which
may be lethal for sensitized animals. The combination of antibiotics
with
inhibitors of endotoxin or the pro-inflammatory response may be
responsible
for increased survival by decrease of endotoxin release. The clinical
significance
of antibiotic-induced endotoxin release is documented only in a few
clinical
disorders, e.g., meningitis, urosepsis. The difference in endotoxin
release
by PBP 2-specific antibiotics, e.g., imipenem, and PBP 3-specific
antibiotics,
e.g., ceftazidime, may not be visible in each study. Patients with
increased
MOF scores may profit from treatment with antibiotics known to decrease
endotoxin. In conclusion, the clinical significance of
antibiotic-induced
endotoxin release remains to be clarified. Type of pathogen and its
virulence
may be more important than recently suggested. gram-positive pathogens
were just recently recognized as an important factor for the
development
of the host response. In case of FUO in ICU patients either failure of
treatment, e.g., failure of source control in IAI, or a side effect of
antibiotic treatment, e.g., endotoxin release, should be considered as
a cause of the feverref.